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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54338872_54340654_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54338872 - 54340654
Intron Length:
1783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGGACT
5'SS Class:
major
3'SS Sequence:
TCTCTCCACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
ACTCTCCTGATT
Flanking Amino Acid:
EGYSLPRKCNTEQAGRPKCP
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.3
76.1
39.5
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
74.4
0.55
0.8
69
30.5
Minor 5ss
36.3
-1.6
3.2
49.4
40
Minor BPS
49.5
0.05
1.6
66.89
38

Associated Gene:

Gene:
MCM5
Ensembl Gene ID:
ENSAPLG00000007931
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008297
54334045 - 54342393
8349