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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54340828_54341273_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54340828 - 54341273
Intron Length:
446

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTTTCTCACCT
Flanking Amino Acid:
ANAASIRSLKSDQMSHLVKI
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
66.5
41.6
Major BPS
85
0.87
0.8
85.6
23
Major PPT
90.2
0.9
0.6
84.6
23.3
Minor 5ss
30.7
-2.2
3.2
37.8
47.1
Minor BPS
66
0.58
1.8
87.74
37.8

Associated Gene:

Gene:
MCM5
Ensembl Gene ID:
ENSAPLG00000007931
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008297
54334045 - 54342393
8349