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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54345992_54346583_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54345992 - 54346583
Intron Length:
592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACATAAT
U12 Branch Point Sequence:
GGCCACATAATG
Flanking Amino Acid:
AKKAFLLNIQVFEALQELVS
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
86.6
22.3
Major BPS
66.4
0.41
1.1
66.3
36.5
Major PPT
84.8
0.78
0.7
83.6
24.5
Minor 5ss
30.6
-2.2
2.6
35.8
41.1
Minor BPS
44.3
-0.5
1.8
44.75
40.8

Associated Gene:

Gene:
HMOX1
Ensembl Gene ID:
ENSAPLG00000008265
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008590
54344265 - 54349924
5660