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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54347076_54349479_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54347076 - 54349479
Intron Length:
2404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGATAT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTCAT
U12 Branch Point Sequence:
TGTACCTCATCC
Flanking Amino Acid:
KGQVSLHEFKLVTASLYFIY
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
79.4
29.5
Major BPS
73.5
0.58
1
73.6
32.5
Major PPT
82.4
0.73
0.8
79.8
32.2
Minor 5ss
45.7
-0.5
2.9
64.3
47.2
Minor BPS
54.4
0.12
1.9
68.73
42.2

Associated Gene:

Gene:
HMOX1
Ensembl Gene ID:
ENSAPLG00000008265
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008590
54344265 - 54349924
5660