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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54358985_54359077_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54358985 - 54359077
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
GCTCTTGTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
CCTTGCTGATGC
Flanking Amino Acid:
SEDAKGVTSEEFDKFLEERA
Intron Amino Acid Position:
442

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
82.4
28.6
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
73
0.52
0.9
64.4
41.4
Minor 5ss
35
-1.7
3.5
49.9
46.6
Minor BPS
41
-0.7
2.2
50.27
46.5

Associated Gene:

Gene:
TOM1
Ensembl Gene ID:
ENSAPLG00000008336
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008763
54358836 - 54378298
19463