Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54361259_54361700_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

54361259 - 54361700

Intron Length:

442

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTAAGTGGC

5'SS Class:

strong_major

3'SS Sequence:

CTCTCTCGACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTCAG

U12 Branch Point Sequence:

TCTCTCTCGACC

Flanking Amino Acid:

LDARQQNTGAGEFGASSDGA

Intron Amino Acid Position:

389

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.83

70.9

39.9

Major BPS

60.8

0.27

1.6

71.4

45.1

Major PPT

68.3

0.41

62.2

38.6

Minor 5ss

33.5

-1.9

3.2

44.4

43.5

Minor BPS

56.8

0.2

1.6

67.1

38.7

Associated Gene:

Gene:

TOM1

Ensembl Gene ID:

ENSAPLG00000008336

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008763

54358836 - 54378298

19463