Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54361777_54364357_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

54361777 - 54364357

Intron Length:

2581

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTGAGTGTA

5'SS Class:

major

3'SS Sequence:

TTTGTGCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTATTCACCT

Flanking Amino Acid:

RGSSLAEQRREVKYEDPQAS

Intron Amino Acid Position:

363

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.3

0.55

71.3

34.5

Major BPS

96.5

1.15

0.6

34.2

Major PPT

84.4

0.77

0.9

81.2

36.5

Minor 5ss

32.1

-2

3.3

36.5

41.7

Minor BPS

54.6

0.22

81.08

40.7

Associated Gene:

Gene:

TOM1

Ensembl Gene ID:

ENSAPLG00000008336

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008763

54358836 - 54378298

19463