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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54369023_54369131_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54369023 - 54369131
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCAA
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTTCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCAAAT
U12 Branch Point Sequence:
TGTCAAATGACG
Flanking Amino Acid:
VHDKVLTLIQSWADAFRSSP
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
70.2
37.7
Major BPS
59.5
0.24
1.2
67.3
37.8
Major PPT
79.3
0.66
0.7
72.1
32.5
Minor 5ss
31.7
-2.1
3
37.9
46.9
Minor BPS
42.8
-0.7
2
52.92
40.8

Associated Gene:

Gene:
TOM1
Ensembl Gene ID:
ENSAPLG00000008336
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008763
54358836 - 54378298
19463