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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54369282_54369424_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54369282 - 54369424
Intron Length:
143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCTTCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTAAT
U12 Branch Point Sequence:
TTTGCCTTCAAA
Flanking Amino Acid:
NFHEVMLALTVLETCVKNCG
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
77.8
32
Major BPS
70.5
0.51
1.1
69.7
35.5
Major PPT
70.3
0.46
1
70.8
33.8
Minor 5ss
29.4
-2.4
3.2
40.8
45.4
Minor BPS
60.4
0.32
2
76.43
40.8

Associated Gene:

Gene:
TOM1
Ensembl Gene ID:
ENSAPLG00000008336
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008763
54358836 - 54378298
19463