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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54369504_54371177_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54369504 - 54371177
Intron Length:
1674

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGGAG
5'SS Class:
major
3'SS Sequence:
ATTTCTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
ATTTCTCCATCT
Flanking Amino Acid:
ICDIINETEEGPKDAFRAIK
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
63.9
42.4
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
84.1
0.77
0.7
78.3
29.7
Minor 5ss
28.1
-2.5
3.4
29
43.5
Minor BPS
48.6
-0
2.1
75.5
41.1

Associated Gene:

Gene:
TOM1
Ensembl Gene ID:
ENSAPLG00000008336
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008763
54358836 - 54378298
19463