Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54380658_54382635_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

54380658 - 54382635

Intron Length:

1978

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTGAGTTCC

5'SS Class:

strong_major

3'SS Sequence:

TTTCTTTTCCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CATTAAA

U12 Branch Point Sequence:

ATTACCTGACAT

Flanking Amino Acid:

ELNGCPKQVLSNTLDNIAYI

Intron Amino Acid Position:

652

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

0.9

73.7

31.1

Major BPS

70.2

0.5

71.6

30.1

Major PPT

90.1

0.9

0.6

84.1

30.8

Minor 5ss

36.2

-1.6

2.8

41.9

38.9

Minor BPS

50.8

0.1

1.9

73.88

42.2

Associated Gene:

Gene:

HMGXB4

Ensembl Gene ID:

ENSAPLG00000008799

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042550

54379613 - 54388206

8594

ENSAPLT00000009147

54380529 - 54391444

10916