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Intron Name: Anas_platyrhynchos_platyrhynchos_1_54382759_54383965_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

54382759 - 54383965

Intron Length:

1207

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGTCTG

5'SS Class:

strong_major

3'SS Sequence:

TCCTTACTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTATAAT

U12 Branch Point Sequence:

CTTTCCTTACTT

Flanking Amino Acid:

LIGHRLQETEGMVAVSGSLS

Intron Amino Acid Position:

611

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.5

0.95

0.8

77.8

38.7

Major BPS

75.5

0.63

1.1

34.4

Major PPT

0.72

0.8

73.4

36.1

Minor 5ss

32.4

-2

40.4

45.7

Minor BPS

74.2

0.84

1.6

87.41

38.9

Associated Gene:

Gene:

HMGXB4

Ensembl Gene ID:

ENSAPLG00000008799

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042550

54379613 - 54388206

8594

ENSAPLT00000009147

54380529 - 54391444

10916