Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54384136_54384688_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

54384136 - 54384688

Intron Length:

553

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATTGTT

5'SS Class:

strong_major

3'SS Sequence:

CATGTATTTACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

GGAATTTTAATT

Flanking Amino Acid:

SSSDGAPKIKASPPGVISPQ

Intron Amino Acid Position:

554

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.1

0.9

87.2

27.3

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

76.6

0.6

0.9

40.7

Minor 5ss

38.7

-1.3

3.4

58.4

46.2

Minor BPS

58.6

0.35

1.3

66.68

38.1

Associated Gene:

Gene:

HMGXB4

Ensembl Gene ID:

ENSAPLG00000008799

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009147

54380529 - 54391444

10916

ENSAPLT00000042550

54379613 - 54388206

8594