Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54384795_54385081_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

54384795 - 54385081

Intron Length:

287

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGGATG

5'SS Class:

strong_major

3'SS Sequence:

ATGGTAACTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

CTTTTCATACCA

Flanking Amino Acid:

WKQLPEKDKLVWKQKAQYLQ

Intron Amino Acid Position:

519

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.4

0.79

0.9

75.2

40.6

Major BPS

100

1.24

0.5

100

Major PPT

65.1

0.34

56.8

Minor 5ss

-1.6

3.3

45.6

43.8

Minor BPS

55.1

0.16

1.9

71.45

40.9

Associated Gene:

Gene:

HMGXB4

Ensembl Gene ID:

ENSAPLG00000008799

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042550

54379613 - 54388206

8594

ENSAPLT00000009147

54380529 - 54391444

10916