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Intron Name: Anas_platyrhynchos_platyrhynchos_1_54385147_54385690_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

54385147 - 54385690

Intron Length:

544

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTGAGAAAA

5'SS Class:

strong_major

3'SS Sequence:

CTTCTGCTGTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTTAT

U12 Branch Point Sequence:

TTTATTTGAAAC

Flanking Amino Acid:

TNIVSEHPRIDFGDLSKKLA

Intron Amino Acid Position:

497

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.6

0.91

0.8

82.1

24.6

Major BPS

79.9

0.74

0.9

69.7

37.1

Major PPT

73.9

0.54

72.9

37.4

Minor 5ss

27.3

-2.6

2.7

30.6

42.8

Minor BPS

55.9

0.16

1.5

68.96

Associated Gene:

Gene:

HMGXB4

Ensembl Gene ID:

ENSAPLG00000008799

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042550

54379613 - 54388206

8594

ENSAPLT00000009147

54380529 - 54391444

10916