Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54385773_54386985_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

54385773 - 54386985

Intron Length:

1213

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGGAAA

5'SS Class:

strong_major

3'SS Sequence:

TTCTTCTGACTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATAAC

U12 Branch Point Sequence:

TTTCTTCTGACT

Flanking Amino Acid:

EREREREREKPKKKNMSAYQ

Intron Amino Acid Position:

470

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

77.7

Major BPS

77.9

0.69

78.3

31.3

Major PPT

70.9

0.47

66.7

39.3

Minor 5ss

33.3

-1.9

3.2

39.8

40.3

Minor BPS

58.6

0.35

1.6

80.89

34.4

Associated Gene:

Gene:

HMGXB4

Ensembl Gene ID:

ENSAPLG00000008799

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009147

54380529 - 54391444

10916