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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54388179_54389176_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54388179 - 54389176
Intron Length:
998

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGACAG
5'SS Class:
strong_major
3'SS Sequence:
GACTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
CTTCTCTTGACT
Flanking Amino Acid:
KHSSDEYCSRDLSSSDPPSK
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
71.6
40.1
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
83.1
0.74
0.8
80.5
36.8
Minor 5ss
31.3
-2.1
3.1
38.3
46.6
Minor BPS
73.4
0.82
1.2
84.21
36.5

Associated Gene:

Gene:
HMGXB4
Ensembl Gene ID:
ENSAPLG00000008799
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009147
54380529 - 54391444
10916