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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54389253_54390587_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54389253 - 54390587
Intron Length:
1335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGGAAG
5'SS Class:
major
3'SS Sequence:
GTTCTTATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTGTTCTTATTC
Flanking Amino Acid:
DQLQEEERTQDSELFPGTES
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.3
69.6
42.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
78.3
0.64
0.9
70.6
39.9
Minor 5ss
27
-2.6
2.9
30.6
42.9
Minor BPS
65.8
0.48
1.6
73.37
38.4

Associated Gene:

Gene:
HMGXB4
Ensembl Gene ID:
ENSAPLG00000008799
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009147
54380529 - 54391444
10916