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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54390695_54391338_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54390695 - 54391338
Intron Length:
644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGACTT
5'SS Class:
strong_major
3'SS Sequence:
ACATACATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AATTTCTTAATT
Flanking Amino Acid:
MAYDDSKKKEEFLDSDRSDV
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
77.2
37.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
64.5
0.33
1
60.1
40.4
Minor 5ss
44
-0.7
3.1
65.1
46.1
Minor BPS
80.6
1.04
1
87.27
31.5

Associated Gene:

Gene:
HMGXB4
Ensembl Gene ID:
ENSAPLG00000008799
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009147
54380529 - 54391444
10916