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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54406114_54411751_R

Intron Information:

Intron Rank:
144139
Intron Class:
major
Intron Phase:
Intron Coordinates:
54406114 - 54411751
Intron Length:
5638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCAAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
CTTTATTTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.9
1.06
0.6
93
14.8
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
71.7
0.49
1
68
37.9
Minor 5ss
40.7
-1
3
57.8
46.8
Minor BPS
72.7
0.69
1.5
79.02
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024794
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032204
54403482 - 54412172
8691