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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54480098_54480752_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54480098 - 54480752
Intron Length:
655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCTTGAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TGTTCTTGAAAG
Flanking Amino Acid:
FIPAPKADIAASSLMPRKLA
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
85
32.3
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
67.7
0.4
1.2
71
39
Minor 5ss
43.9
-0.7
2.9
66.1
38.6
Minor BPS
60.7
0.2
1.6
66.62
40.7

Associated Gene:

Gene:
ISX
Ensembl Gene ID:
ENSAPLG00000008806
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009149
54479852 - 54505405
25554