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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54485359_54498218_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54485359 - 54498218
Intron Length:
12860

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCACC
5'SS Class:
major
3'SS Sequence:
CTTGTTTGCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTCTATGAAAT
Flanking Amino Acid:
CDFPVDHPLHVERKGKRRIR
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
67.6
37.6
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
76
0.58
0.9
71.5
38.3
Minor 5ss
35.3
-1.7
2.8
41.4
39.1
Minor BPS
52.2
0.15
1.8
77.13
38.3

Associated Gene:

Gene:
ISX
Ensembl Gene ID:
ENSAPLG00000008806
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009149
54479852 - 54505405
25554