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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54520414_54522247_F

Intron Information:

Intron Rank:
142661
Intron Class:
major
Intron Phase:
Intron Coordinates:
54520414 - 54522247
Intron Length:
1834

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
TTTCTCATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
AGTTTCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
80.7
33.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
87
0.83
0.7
81.8
28.4
Minor 5ss
38.7
-1.3
2.8
47.9
41.8
Minor BPS
65.4
0.56
1.5
78.63
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026892
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023684
54520397 - 54528397
8001