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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54574384_54574711_F

Intron Information:

Intron Rank:
145846
Intron Class:
major
Intron Phase:
Intron Coordinates:
54574384 - 54574711
Intron Length:
328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTGTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
ATTATATAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
21.5
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
86.6
0.82
0.8
83.2
32
Minor 5ss
42.8
-0.8
2.8
59.5
45
Minor BPS
49.3
0.03
1.9
71.79
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028598
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020441
54574225 - 54598150
23926