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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54574384_54597197_F

Intron Information:

Intron Rank:
145850
Intron Class:
major
Intron Phase:
Intron Coordinates:
54574384 - 54597197
Intron Length:
22814

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAA
U12 Branch Point Sequence:
TGTTTGTTAAGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
21.5
Major BPS
72.1
0.55
1.2
63.7
43.9
Major PPT
83.6
0.76
0.8
76.8
37.4
Minor 5ss
42.8
-0.8
2.8
59.5
45
Minor BPS
52.7
0.06
2.3
70.25
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028598
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048308
54537343 - 54598150
60808