Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5464135_5465943_R

Intron Information:

Intron Rank:

134458

Intron Class:

major

Intron Phase:

Intron Coordinates:

5464135 - 5465943

Intron Length:

1809

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTATGTGGA

5'SS Class:

major

3'SS Sequence:

ATTTCCTTGACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGAAAT

U12 Branch Point Sequence:

ATTTCCTTGACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.64

41.2

Major BPS

67.2

0.43

1.2

73.3

39.1

Major PPT

0.61

36.8

Minor 5ss

37.7

-1.4

3.1

40.4

45.8

Minor BPS

86.9

1.16

0.9

89.12

26.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019629

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030241

5463848 - 5466431

2584