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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54649867_54661935_R

Intron Information:

Intron Rank:
139540
Intron Class:
major
Intron Phase:
Intron Coordinates:
54649867 - 54661935
Intron Length:
12069

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTGAAA
U12 Branch Point Sequence:
AAACCCTCCATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
86.2
29.3
Major BPS
56.6
0.17
1.3
67.7
36.5
Major PPT
81.8
0.72
0.8
77.1
31.6
Minor 5ss
44.5
-0.6
2.5
60.9
43.5
Minor BPS
45.5
-0.3
1.9
53.06
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022548
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046254
54649625 - 54662733
13109