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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54664629_54677417_R

Intron Information:

Intron Rank:
141723
Intron Class:
major
Intron Phase:
Intron Coordinates:
54664629 - 54677417
Intron Length:
12789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
79
35.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
91.7
0.94
0.6
87.8
22.4
Minor 5ss
36.5
-1.5
3.2
50.8
45.8
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023609
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041934
54664469 - 54689692
25224
ENSAPLT00000030718
54664587 - 54677590
13004