Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54677461_54689630_R

Intron Information:

Intron Rank:

141725

Intron Class:

major

Intron Phase:

Intron Coordinates:

54677461 - 54689630

Intron Length:

12170

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGTACT

5'SS Class:

strong_major

3'SS Sequence:

TATATCTGTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGTTGAT

U12 Branch Point Sequence:

AGTCTCAAAACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.1

0.9

84.4

33.5

Major BPS

72.4

0.56

1.1

63.1

44.4

Major PPT

72.1

0.5

70.4

40.8

Minor 5ss

-1.5

3.1

51.8

44.8

Minor BPS

47.3

-0.2

1.9

60.86

38.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023609

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041934

54664469 - 54689692

25224