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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5470680_5471683_R

Intron Information:

Intron Rank:
134460
Intron Class:
major
Intron Phase:
Intron Coordinates:
5470680 - 5471683
Intron Length:
1004

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAACAT
U12 Branch Point Sequence:
GTAACCAAAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
75.9
35.2
Major BPS
54.4
0.11
1
61.4
34.3
Major PPT
77.9
0.63
1
72.9
42.2
Minor 5ss
44.8
-0.6
2.6
56.7
47.6
Minor BPS
44.8
-0.4
2
56.67
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019629
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031049
5463848 - 5471883
8036