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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54844186_54848560_F

Intron Information:

Intron Rank:
133097
Intron Class:
major
Intron Phase:
Intron Coordinates:
54844186 - 54848560
Intron Length:
4375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTAATC
5'SS Class:
major
3'SS Sequence:
CATTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
TGAGCTGTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.1
72
37.9
Major BPS
73.9
0.59
1
81
30.2
Major PPT
89.9
0.9
0.7
88.2
28.6
Minor 5ss
37
-1.5
3.2
52.5
44.2
Minor BPS
50
-0
2.1
64.51
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021567
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044163
54842613 - 54849070
6458