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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54844186_54871642_F

Intron Information:

Intron Rank:
133094
Intron Class:
major
Intron Phase:
Intron Coordinates:
54844186 - 54871642
Intron Length:
27457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTAATC
5'SS Class:
major
3'SS Sequence:
TATTCTATTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTCTAT
U12 Branch Point Sequence:
TTCTATTCTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.1
72
37.9
Major BPS
65
0.37
1.3
64.5
42.5
Major PPT
78.8
0.65
0.8
71.1
39.2
Minor 5ss
37
-1.5
3.2
52.5
44.2
Minor BPS
46.8
-0.1
2
68.71
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021567
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022412
54842613 - 54871751
29139