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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55043590_55055288_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
55043590 - 55055288
Intron Length:
11699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGTA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCGTATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACATAT
U12 Branch Point Sequence:
CTTCTCGTATCA
Flanking Amino Acid:
VTLVKSVLFHRRNPLHFHLI
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
75.5
34.1
Major BPS
57.6
0.19
1
53
33.7
Major PPT
74.9
0.56
0.9
73.8
35.5
Minor 5ss
32.2
-2
3.7
46.2
49.1
Minor BPS
47
-0.2
2.2
63.84
42.8

Associated Gene:

Gene:
LARGE1
Ensembl Gene ID:
ENSAPLG00000008894
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024425
54905046 - 55181790
276745
ENSAPLT00000022382
55002765 - 55181770
179006
ENSAPLT00000009291
54905046 - 55182358
277313
ENSAPLT00000024756
54922195 - 55181770
259576