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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5504590_5506747_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5504590 - 5506747
Intron Length:
2158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTCATAATA
Flanking Amino Acid:
MSYTIMKLHRKHLMKLQMEE
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
83.5
27.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.6
0.87
0.6
85.2
22.3
Minor 5ss
36.9
-1.5
3.1
49.9
40.5
Minor BPS
67
0.53
1.5
76.87
33.7

Associated Gene:

Gene:
USP6NL
Ensembl Gene ID:
ENSAPLG00000010144
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039025
5493085 - 5604274
111190
ENSAPLT00000010615
5493085 - 5604212
111128
ENSAPLT00000046862
5493085 - 5559299
66215