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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5506848_5506939_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5506848 - 5506939
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
TCTTTCATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GGTTCTTTCATT
Flanking Amino Acid:
KWFFQCFLDRTPFTLSLRLW
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1.1
76.1
34.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
86.7
0.83
0.7
81.6
28.7
Minor 5ss
35.9
-1.6
2.9
43.1
43.9
Minor BPS
62.2
0.46
1.7
77.12
39.8

Associated Gene:

Gene:
USP6NL
Ensembl Gene ID:
ENSAPLG00000010144
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039025
5493085 - 5604274
111190
ENSAPLT00000010615
5493085 - 5604212
111128
ENSAPLT00000046862
5493085 - 5559299
66215