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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5507006_5508116_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5507006 - 5508116
Intron Length:
1111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
GTGTTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATATTTTTAAAA
Flanking Amino Acid:
KFLSKLKQHLDSQEMSTSFY
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.5
35
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85.4
0.8
0.9
79.9
37.7
Minor 5ss
37.6
-1.4
2.8
48.3
42.5
Minor BPS
66.6
0.52
1.3
71.49
33.9

Associated Gene:

Gene:
USP6NL
Ensembl Gene ID:
ENSAPLG00000010144
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039025
5493085 - 5604274
111190
ENSAPLT00000010615
5493085 - 5604212
111128
ENSAPLT00000046862
5493085 - 5559299
66215