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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55076338_55118982_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
55076338 - 55118982
Intron Length:
42645

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCCTAA
5'SS Class:
weak_major
3'SS Sequence:
TGCTCATTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TTTTGCTCATTT
Flanking Amino Acid:
ELWAVFHKFKGQQVLGLVEN
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.2
63.8
39
Major BPS
76.8
0.67
1
66
40.9
Major PPT
78.7
0.65
0.9
69.5
40.7
Minor 5ss
66.8
0.57
2
73
44
Minor BPS
52.3
0.15
2.2
79.99
42.5

Associated Gene:

Gene:
LARGE1
Ensembl Gene ID:
ENSAPLG00000008894
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024756
54922195 - 55181770
259576
ENSAPLT00000024425
54905046 - 55181790
276745
ENSAPLT00000022382
55002765 - 55181770
179006
ENSAPLT00000009291
54905046 - 55182358
277313