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Intron Name: Anas_platyrhynchos_platyrhynchos_1_55119088_55136835_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

55119088 - 55136835

Intron Length:

17748

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGCCCA

5'SS Class:

major

3'SS Sequence:

TGTTTTCCTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTATCAC

U12 Branch Point Sequence:

GTTCTCTGCACT

Flanking Amino Acid:

WPALGRGYNTGVILLLLDKL

Intron Amino Acid Position:

298

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.9

0.66

1.1

62.7

43.7

Major BPS

60.6

0.26

1.3

65.7

Major PPT

87.7

0.85

0.7

85.6

29.1

Minor 5ss

37.1

-1.5

3.2

48.8

46.9

Minor BPS

51.6

0.13

1.9

74.97

41.3

Associated Gene:

Gene:

LARGE1

Ensembl Gene ID:

ENSAPLG00000008894

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024425

54905046 - 55181790

276745

ENSAPLT00000022382

55002765 - 55181770

179006

ENSAPLT00000009291

54905046 - 55182358

277313

ENSAPLT00000024756

54922195 - 55181770

259576