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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55136949_55138159_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55136949 - 55138159
Intron Length:
1211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTCTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACAACAT
U12 Branch Point Sequence:
ACATACCCAACT
Flanking Amino Acid:
SMLSTSLADQDIFNAVIKQN
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
49.8
-0
1.1
57.3
37.7
Major PPT
71.1
0.48
1
65.8
41
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
46.8
-0.1
2
65.88
43.8

Associated Gene:

Gene:
LARGE1
Ensembl Gene ID:
ENSAPLG00000008894
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024756
54922195 - 55181770
259576
ENSAPLT00000024425
54905046 - 55181790
276745
ENSAPLT00000022382
55002765 - 55181770
179006
ENSAPLT00000009291
54905046 - 55182358
277313