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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55148186_55160440_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55148186 - 55160440
Intron Length:
12255

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTGGT
5'SS Class:
major
3'SS Sequence:
TTTTCCCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTCCCTTACA
Flanking Amino Acid:
PSEADINSENLQKQLSELDE
Intron Amino Acid Position:
430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1.3
76.2
39.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
90.2
0.9
0.6
84.6
23.3
Minor 5ss
35.8
-1.6
3.3
48.4
41.2
Minor BPS
67.8
0.55
2
84.76
34.4

Associated Gene:

Gene:
LARGE1
Ensembl Gene ID:
ENSAPLG00000008894
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022382
55002765 - 55181770
179006
ENSAPLT00000009291
54905046 - 55182358
277313
ENSAPLT00000024756
54922195 - 55181770
259576
ENSAPLT00000024425
54905046 - 55181790
276745