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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5515028_5517715_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5515028 - 5517715
Intron Length:
2688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CATCTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTACAT
U12 Branch Point Sequence:
TTTTCTACATCT
Flanking Amino Acid:
HIMFRDRYGVKQQSLFHVLA
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
70.2
0.5
1.1
77.2
36
Major PPT
81.6
0.71
0.8
73.2
36.9
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
52.1
0.14
2.1
81.24
40.4

Associated Gene:

Gene:
USP6NL
Ensembl Gene ID:
ENSAPLG00000010144
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039025
5493085 - 5604274
111190
ENSAPLT00000010615
5493085 - 5604212
111128
ENSAPLT00000046862
5493085 - 5559299
66215