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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55160605_55165006_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
55160605 - 55165006
Intron Length:
4402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTTTTCTTATTC
Flanking Amino Acid:
VTLVAQLSMDRLQMLEAICK
Intron Amino Acid Position:
484

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
74.1
38.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
86.8
0.83
0.7
84.4
23.4
Minor 5ss
37.3
-1.4
3.1
47.6
48.1
Minor BPS
65.7
0.47
1.6
73.26
38.6

Associated Gene:

Gene:
LARGE1
Ensembl Gene ID:
ENSAPLG00000008894
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024425
54905046 - 55181790
276745
ENSAPLT00000022382
55002765 - 55181770
179006
ENSAPLT00000009291
54905046 - 55182358
277313
ENSAPLT00000024756
54922195 - 55181770
259576