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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55165286_55171660_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
55165286 - 55171660
Intron Length:
6375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TTCTGCTCAAAT
Flanking Amino Acid:
LPMYGLYEYLRKSVIQLDLA
Intron Amino Acid Position:
577

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.5
32.7
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
90.9
0.92
0.6
84.1
30.9
Minor 5ss
32.1
-2
3.1
40.8
45.4
Minor BPS
54.5
0.22
2.1
77.48
44.6

Associated Gene:

Gene:
LARGE1
Ensembl Gene ID:
ENSAPLG00000008894
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024425
54905046 - 55181790
276745
ENSAPLT00000022382
55002765 - 55181770
179006
ENSAPLT00000009291
54905046 - 55182358
277313
ENSAPLT00000024756
54922195 - 55181770
259576