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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55177094_55181572_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55177094 - 55181572
Intron Length:
4479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTCAC
U12 Branch Point Sequence:
ACACCCCTCACA
Flanking Amino Acid:
VAHIMELDAQEYEFTVLPNA
Intron Amino Acid Position:
692

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
60.1
0.25
1.1
62.9
34.3
Major PPT
81.2
0.7
0.7
73.4
31.5
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
46.5
-0.2
2
57.06
41.7

Associated Gene:

Gene:
LARGE1
Ensembl Gene ID:
ENSAPLG00000008894
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009291
54905046 - 55182358
277313
ENSAPLT00000024756
54922195 - 55181770
259576
ENSAPLT00000022382
55002765 - 55181770
179006