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Intron Name: Anas_platyrhynchos_platyrhynchos_1_55177618_55181572_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

55177618 - 55181572

Intron Length:

3955

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATTTGAT

5'SS Class:

major

3'SS Sequence:

CTTTCTCCCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCCTCAC

U12 Branch Point Sequence:

ACACCCCTCACA

Flanking Amino Acid:

AMQQQTPEDPGVRVHGAAQR

Intron Amino Acid Position:

721

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.9

0.68

33.1

Major BPS

60.1

0.25

1.1

62.9

34.3

Major PPT

81.2

0.7

73.4

31.5

Minor 5ss

40.5

-1.1

3.2

57.9

46.8

Minor BPS

46.5

-0.2

57.06

41.7

Associated Gene:

Gene:

LARGE1

Ensembl Gene ID:

ENSAPLG00000008894

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024425

54905046 - 55181790

276745