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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5520487_5529047_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
5520487 - 5529047
Intron Length:
8561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTTACGCCT
5'SS Class:
weak_major
3'SS Sequence:
TTTCTTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
TTTCTTTTTACA
Flanking Amino Acid:
WEKYKNSEKVNSTGEFIKGS
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.9
0.07
1.3
52.8
44
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
95.3
1.02
0.5
91.2
20.6
Minor 5ss
37
-1.5
3.3
50.7
39.5
Minor BPS
63.5
0.42
1.6
76.13
34.5

Associated Gene:

Gene:
USP6NL
Ensembl Gene ID:
ENSAPLG00000010144
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046482
5520405 - 5553060
32656