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Intron Name: Anas_platyrhynchos_platyrhynchos_1_55249439_55269756_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

55249439 - 55269756

Intron Length:

20318

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGGGG

5'SS Class:

strong_major

3'SS Sequence:

TCTTTTTCCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTGAT

U12 Branch Point Sequence:

GTGTCTTTGATT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.87

0.9

67.8

43.5

Major BPS

0.85

0.9

39.9

Major PPT

87.6

0.84

0.6

83.5

24.8

Minor 5ss

28.6

-2.5

3.5

37.8

47.1

Minor BPS

70.9

0.74

1.2

79.17

37.6

Associated Gene:

Gene:

SYN3

Ensembl Gene ID:

ENSAPLG00000010781

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011240

55249299 - 55436457

187159