About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5529134_5533533_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5529134 - 5533533
Intron Length:
4400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
GATTTCATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATATTCTGATTT
Flanking Amino Acid:
LPVHDAAIEKQKHLEIERTT
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
23.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.7
0.65
0.9
74.8
39.5
Minor 5ss
40.5
-1.1
2.7
50.7
45.7
Minor BPS
53.7
0.19
1.7
71.82
39.2

Associated Gene:

Gene:
USP6NL
Ensembl Gene ID:
ENSAPLG00000010144
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039025
5493085 - 5604274
111190
ENSAPLT00000010615
5493085 - 5604212
111128
ENSAPLT00000046862
5493085 - 5559299
66215