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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5529192_5550871_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
5529192 - 5550871
Intron Length:
21680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTAAG
5'SS Class:
major
3'SS Sequence:
TACATTAAATAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTTTTCTCAATA
Flanking Amino Acid:
YKVTDRFGFLHNFECIHLEK
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
72
39.5
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
50.5
0.01
1.2
55.2
42.6
Minor 5ss
37.3
-1.4
2.8
48.1
41.6
Minor BPS
74.1
0.75
1.4
83.18
31.2

Associated Gene:

Gene:
USP6NL
Ensembl Gene ID:
ENSAPLG00000010144
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046482
5520405 - 5553060
32656