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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55294904_55308051_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
55294904 - 55308051
Intron Length:
13148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
ATGTCTCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TAAAATGTCACT
Flanking Amino Acid:
QVMRNGTKVVRSFKPDFVLI
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
78.6
37.3
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
79.3
0.66
0.9
70.2
40.7
Minor 5ss
28.5
-2.5
3.1
39.7
45.9
Minor BPS
40.1
-0.7
2.4
59.59
43.4

Associated Gene:

Gene:
SYN3
Ensembl Gene ID:
ENSAPLG00000010781
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011240
55249299 - 55436457
187159